安装bedtools报错 fatal error: lzma.h: No such file or directory

1、问题安装bedtools 执行make命令是报错fatal error: lzma.h: No such file or directory

root@DESKTOP-1N42TVH:/home/software/bedtools2# ls
LICENSE  Makefile  README.md  bin  data  docs  genomes  obj  scripts  src  test  tutorial
root@DESKTOP-1N42TVH:/home/software/bedtools2# make

2、解决方法

root@DESKTOP-1N42TVH:/home/software/bedtools2# apt install libbz2-dev

root@DESKTOP-1N42TVH:/home/software/bedtools2# apt install zlib1g-dev

root@DESKTOP-1N42TVH:/home/software/bedtools2# apt install zlib1g-dev

3、再次执行make验证， 已经没有fatal error: lzma.h: No such file or directory，但是出现新的问题，没有python

root@DESKTOP-1N42TVH:/home/software/bedtools2# make

4、安装python

查看系统版本

root@DESKTOP-1N42TVH:/home/software/bedtools2# cat /proc/version
Linux version 5.10.16.3-microsoft-standard-WSL2 (oe-user@oe-host) (x86_64-msft-linux-gcc (GCC) 9.3.0, GNU ld (GNU Binutils) 2.34.0.20200220) #1 SMP Fri Apr 2 22:23:49 UTC 2021
root@DESKTOP-1N42TVH:/home/software/bedtools2# cat /etc/issue
Ubuntu 20.04.3 LTS n l

查看python

root@DESKTOP-1N42TVH:/home/software/bedtools2# python

Command 'python' not found, did you mean:

  command 'python3' from deb python3
  command 'python' from deb python-is-python3

root@DESKTOP-1N42TVH:/home/software/bedtools2# python3    ## 系统默认安装的python3
Python 3.8.10 (default, Nov 26 2021, 20:14:08)
[GCC 9.3.0] on linux
Type "help", "copyright", "credits" or "license" for more information.
>>> quit()

5、建立软连接解决

root@DESKTOP-1N42TVH:/home/software/bedtools2# which python3
/usr/bin/python3
root@DESKTOP-1N42TVH:/home/software/bedtools2# ln -s /usr/bin/python3 /usr/bin/python
root@DESKTOP-1N42TVH:/home/software/bedtools2# python
Python 3.8.10 (default, Nov 26 2021, 20:14:08)
[GCC 9.3.0] on linux
Type "help", "copyright", "credits" or "license" for more information.
>>> quit()

6、再次make测试， 问题解决

root@DESKTOP-1N42TVH:/home/software/bedtools2# ls
LICENSE  Makefile  README.md  bin  data  docs  genomes  obj  scripts  src  test  tutorial
root@DESKTOP-1N42TVH:/home/software/bedtools2# make
Building BEDTools:
=========================================================
CXXFLAGS is [-g -Wall -O2 -std=c++11 ]
DETECTED_VERSION = v2.30.0
CURRENT_VERSION  = v2.30.0
- Building main bedtools binary.
done.
- Creating executables for old CLI.
done.
  * compiling src/htsutil.cpp

原文链接: https://www.cnblogs.com/liujiaxin2018/p/15757153.html

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